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plko 1 trc  (Addgene inc)


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    Structured Review

    Addgene inc plko 1 trc
    Plko 1 Trc, supplied by Addgene inc, used in various techniques. Bioz Stars score: 96/100, based on 1298 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/plko+1+trc/pLKO%2E1+-+TRC+cloning+vector+(Plasmid+%2310878)/pmc12898032-213-8-19
    Average 96 stars, based on 1298 article reviews
    plko 1 trc - by Bioz Stars, 2026-10
    96/100 stars

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    Related Articles

    shRNA:

    Article Title: PINCH-1-dependent regulation on tumor matrix microenvironment in pancreatic cancer.
    Article Snippet: Cancer-associated fibroblasts (CAFs) are vital in advancing pancreatic ductal adenocarcinoma (PDAC) cancer growth and fibrosis.. Although their roles are recognized, the precise molecular mechanisms remain incompletely understood.. The study focuses on PINCH-1, a molecule elevated in various tumors, and its lesser-known effects on tumor stromal cells.

    Article Title: The METTL3-YTHDC1 axis mediates architectural RNA m 6 A modification to modulate the integrity of chromatin TADs in MLLr + AML genome.
    Article Snippet: Generation of METTL3- or YTHDC1-depleted AML cells using pLKO.1-shRNA system Human shRNAs targeting METTL3 and YTHDC1 were designed using the shRNA design tool (https://portals.broadinstitute.org/gpp/public/gene/search). .. The shRNA sequences were subcloned into the RNAi Consortium (TRC)-based short hairpin RNA lentiviral vector, pLKO.1-TRC (Addgene #10878), with scramble shRNA (Addgene #1864) as the control. .. Lentiviral particles were produced in HEK293T cells using pLKO.1-shRNA or shScramble vector, pMD2.G (Addgene #12259) and psPAX2 (Addgene #12260) vectors.

    Article Title: The METTL3-YTHDC1 axis mediates architectural RNA m 6 A modification to modulate the integrity of chromatin TADs in MLLr + AML genome
    Article Snippet: Human shRNAs targeting METTL3 and YTHDC1 were designed using the shRNA design tool ( https://portals.broadinstitute.org/gpp/public/gene/search ). .. The shRNA sequences were subcloned into the RNAi Consortium (TRC)-based short hairpin RNA lentiviral vector, pLKO.1-TRC (Addgene #10878), with scramble shRNA (Addgene #1864) as the control. .. Lentiviral particles were produced in HEK293T cells using pLKO.1-shRNA or shScramble vector, pMD2.G (Addgene #12259) and psPAX2 (Addgene #12260) vectors.

    Article Title: Deuterium modification of tyrosine kinase inhibitors contributes to reversing ferroptosis resistance through upregulation of aldehyde oxidase 1 in hepatocellular carcinoma
    Article Snippet: .. For RNA interference, shRNA sequences against AOX1 and ACSL5 were obtained from Sigma–Aldrich and cloned into pLKO.1 TRC (#10879; Addgene, Cambridge, MA, USA). ..

    Clone Assay:

    Article Title: PINCH-1-dependent regulation on tumor matrix microenvironment in pancreatic cancer.
    Article Snippet: Cancer-associated fibroblasts (CAFs) are vital in advancing pancreatic ductal adenocarcinoma (PDAC) cancer growth and fibrosis.. Although their roles are recognized, the precise molecular mechanisms remain incompletely understood.. The study focuses on PINCH-1, a molecule elevated in various tumors, and its lesser-known effects on tumor stromal cells.

    Article Title: Deuterium modification of tyrosine kinase inhibitors contributes to reversing ferroptosis resistance through upregulation of aldehyde oxidase 1 in hepatocellular carcinoma
    Article Snippet: .. For RNA interference, shRNA sequences against AOX1 and ACSL5 were obtained from Sigma–Aldrich and cloned into pLKO.1 TRC (#10879; Addgene, Cambridge, MA, USA). ..

    Generated:

    Article Title: Spectrin coordinates cell shape and signaling essential for epidermal differentiation.
    Article Snippet: 100 μl transfection mix was used per well with 1 ml FAD medium (12- well plate, 5 nM siRNA f.c.). siRNA (siPOOLs) against αIISpectrin were obtained from siPOOLs from siTOOLs. .. Lentiviral plasmids were generated by cloning oligonucleotides into pLKO.1-TRC (gift from David Root, Broad Institute, Cambridge, MA, USA; #10878; Addgene plasmid), lentivirus-GFP, or lentivirus-RFP (gift from Elaine Fuchs, Rockefeller University, New York, NY, USA; #25999; Addgene plasmid) by digestion with EcoRI and AgeI, as described in the Genetic Perturbation Platform (GPP) website (http://portals.broadinstitute.org/gpp/ public/resources/protocols). .. See also (Beronja et al., 2010; Soffer et al., 2022) for generation of lentiviruses. shRNA sequences were obtained from GPP (https://portals.broadinstitute.org/ gpp/public/): Sptan1(0595) construct #TRCN0000090595, target sequence 5′-GCCACCGATGAAGCTTATAAA-3′.

    Article Title: Spectrin coordinates cell shape and signaling essential for epidermal differentiation
    Article Snippet: 100 μl transfection mix was used per well with 1 ml FAD medium (12-well plate, 5 nM siRNA f.c.). siRNA (siPOOLs) against αII-Spectrin were obtained from siPOOLs from siTOOLs. .. Lentiviral plasmids were generated by cloning oligonucleotides into pLKO.1-TRC (gift from David Root, Broad Institute, Cambridge, MA, USA; #10878; Addgene plasmid), lentivirus-GFP, or lentivirus-RFP (gift from Elaine Fuchs, Rockefeller University, New York, NY, USA; #25999; Addgene plasmid) by digestion with EcoRI and AgeI, as described in the Genetic Perturbation Platform (GPP) website ( http://portals.broadinstitute.org/gpp/public/resources/protocols ). .. See also ( ; ) for generation of lentiviruses. shRNA sequences were obtained from GPP ( https://portals.broadinstitute.org/gpp/public/ ): Sptan1(0595) construct #TRCN0000090595, target sequence 5′-GCC ACC GAT GAA GCT TAT AAA-3′.

    Cloning:

    Article Title: Spectrin coordinates cell shape and signaling essential for epidermal differentiation.
    Article Snippet: 100 μl transfection mix was used per well with 1 ml FAD medium (12- well plate, 5 nM siRNA f.c.). siRNA (siPOOLs) against αIISpectrin were obtained from siPOOLs from siTOOLs. .. Lentiviral plasmids were generated by cloning oligonucleotides into pLKO.1-TRC (gift from David Root, Broad Institute, Cambridge, MA, USA; #10878; Addgene plasmid), lentivirus-GFP, or lentivirus-RFP (gift from Elaine Fuchs, Rockefeller University, New York, NY, USA; #25999; Addgene plasmid) by digestion with EcoRI and AgeI, as described in the Genetic Perturbation Platform (GPP) website (http://portals.broadinstitute.org/gpp/ public/resources/protocols). .. See also (Beronja et al., 2010; Soffer et al., 2022) for generation of lentiviruses. shRNA sequences were obtained from GPP (https://portals.broadinstitute.org/ gpp/public/): Sptan1(0595) construct #TRCN0000090595, target sequence 5′-GCCACCGATGAAGCTTATAAA-3′.

    Article Title: Spectrin coordinates cell shape and signaling essential for epidermal differentiation
    Article Snippet: 100 μl transfection mix was used per well with 1 ml FAD medium (12-well plate, 5 nM siRNA f.c.). siRNA (siPOOLs) against αII-Spectrin were obtained from siPOOLs from siTOOLs. .. Lentiviral plasmids were generated by cloning oligonucleotides into pLKO.1-TRC (gift from David Root, Broad Institute, Cambridge, MA, USA; #10878; Addgene plasmid), lentivirus-GFP, or lentivirus-RFP (gift from Elaine Fuchs, Rockefeller University, New York, NY, USA; #25999; Addgene plasmid) by digestion with EcoRI and AgeI, as described in the Genetic Perturbation Platform (GPP) website ( http://portals.broadinstitute.org/gpp/public/resources/protocols ). .. See also ( ; ) for generation of lentiviruses. shRNA sequences were obtained from GPP ( https://portals.broadinstitute.org/gpp/public/ ): Sptan1(0595) construct #TRCN0000090595, target sequence 5′-GCC ACC GAT GAA GCT TAT AAA-3′.

    Plasmid Preparation:

    Article Title: Spectrin coordinates cell shape and signaling essential for epidermal differentiation.
    Article Snippet: 100 μl transfection mix was used per well with 1 ml FAD medium (12- well plate, 5 nM siRNA f.c.). siRNA (siPOOLs) against αIISpectrin were obtained from siPOOLs from siTOOLs. .. Lentiviral plasmids were generated by cloning oligonucleotides into pLKO.1-TRC (gift from David Root, Broad Institute, Cambridge, MA, USA; #10878; Addgene plasmid), lentivirus-GFP, or lentivirus-RFP (gift from Elaine Fuchs, Rockefeller University, New York, NY, USA; #25999; Addgene plasmid) by digestion with EcoRI and AgeI, as described in the Genetic Perturbation Platform (GPP) website (http://portals.broadinstitute.org/gpp/ public/resources/protocols). .. See also (Beronja et al., 2010; Soffer et al., 2022) for generation of lentiviruses. shRNA sequences were obtained from GPP (https://portals.broadinstitute.org/ gpp/public/): Sptan1(0595) construct #TRCN0000090595, target sequence 5′-GCCACCGATGAAGCTTATAAA-3′.

    Article Title: Spectrin coordinates cell shape and signaling essential for epidermal differentiation
    Article Snippet: 100 μl transfection mix was used per well with 1 ml FAD medium (12-well plate, 5 nM siRNA f.c.). siRNA (siPOOLs) against αII-Spectrin were obtained from siPOOLs from siTOOLs. .. Lentiviral plasmids were generated by cloning oligonucleotides into pLKO.1-TRC (gift from David Root, Broad Institute, Cambridge, MA, USA; #10878; Addgene plasmid), lentivirus-GFP, or lentivirus-RFP (gift from Elaine Fuchs, Rockefeller University, New York, NY, USA; #25999; Addgene plasmid) by digestion with EcoRI and AgeI, as described in the Genetic Perturbation Platform (GPP) website ( http://portals.broadinstitute.org/gpp/public/resources/protocols ). .. See also ( ; ) for generation of lentiviruses. shRNA sequences were obtained from GPP ( https://portals.broadinstitute.org/gpp/public/ ): Sptan1(0595) construct #TRCN0000090595, target sequence 5′-GCC ACC GAT GAA GCT TAT AAA-3′.

    Control:

    Article Title: The METTL3-YTHDC1 axis mediates architectural RNA m 6 A modification to modulate the integrity of chromatin TADs in MLLr + AML genome.
    Article Snippet: Generation of METTL3- or YTHDC1-depleted AML cells using pLKO.1-shRNA system Human shRNAs targeting METTL3 and YTHDC1 were designed using the shRNA design tool (https://portals.broadinstitute.org/gpp/public/gene/search). .. The shRNA sequences were subcloned into the RNAi Consortium (TRC)-based short hairpin RNA lentiviral vector, pLKO.1-TRC (Addgene #10878), with scramble shRNA (Addgene #1864) as the control. .. Lentiviral particles were produced in HEK293T cells using pLKO.1-shRNA or shScramble vector, pMD2.G (Addgene #12259) and psPAX2 (Addgene #12260) vectors.

    Article Title: The METTL3-YTHDC1 axis mediates architectural RNA m 6 A modification to modulate the integrity of chromatin TADs in MLLr + AML genome
    Article Snippet: Human shRNAs targeting METTL3 and YTHDC1 were designed using the shRNA design tool ( https://portals.broadinstitute.org/gpp/public/gene/search ). .. The shRNA sequences were subcloned into the RNAi Consortium (TRC)-based short hairpin RNA lentiviral vector, pLKO.1-TRC (Addgene #10878), with scramble shRNA (Addgene #1864) as the control. .. Lentiviral particles were produced in HEK293T cells using pLKO.1-shRNA or shScramble vector, pMD2.G (Addgene #12259) and psPAX2 (Addgene #12260) vectors.

    Construct:

    Article Title: B4GALT1 and Wntless collaborate to block LRP5/6 translocation from Golgi to cell surface.
    Article Snippet: After translation, low-density lipoprotein receptor–related protein 5/6, LRP5/6, are transported from ER through Golgi to cell surface, where they serve as the co-receptors of Wnt proteins to elicit the WNT/β-catenin signaling.. Here, Golgi-resident β-1, 4galactosyltransferase B4GALT1 is revealed to interact with LRP5/6, causing the Golgi retention of LRP5/6 and ultimately reducing LRP5/6 on the cell surface.. In addition to LRP5/6, B4GALT1 can also bind to the exclusive Wnt transporter Wntless.

    Purification:

    Article Title: B4GALT1 and Wntless collaborate to block LRP5/6 translocation from Golgi to cell surface.
    Article Snippet: After translation, low-density lipoprotein receptor–related protein 5/6, LRP5/6, are transported from ER through Golgi to cell surface, where they serve as the co-receptors of Wnt proteins to elicit the WNT/β-catenin signaling.. Here, Golgi-resident β-1, 4galactosyltransferase B4GALT1 is revealed to interact with LRP5/6, causing the Golgi retention of LRP5/6 and ultimately reducing LRP5/6 on the cell surface.. In addition to LRP5/6, B4GALT1 can also bind to the exclusive Wnt transporter Wntless.



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